Introduction to Organic Chemistry

 

Organic Chemistry

Organic chemistry is the branch of chemistry that deals with organic molecules. An organic molecule is one which contains carbon, and these molecules can range in size from simple molecules to complex structures containing thousands of atoms! Although the main element in organic compounds is carbon, other elements such as hydrogen (H), oxygen (O), nitrogen (N), sulfur (S) and phosphorus (P) are also common in these molecules.

Until the early nineteenth century, chemists had managed to make many simple compounds in the laboratory, but were still unable to produce the complex molecules that they found in living organisms. It was around this time that a Swedish chemist called Jons Jakob Berzelius suggested that compounds found only in living organisms (the organic compounds) should be grouped separately from those found in the non-living world (the inorganic compounds). He also suggested that the laws that governed how organic compounds formed, were different from those for inorganic compounds. From this, the idea developed that there was a ’vital force’ in organic compounds. In other words, scientists believed that organic compounds would not follow the normal physical and chemical laws that applied to other inorganic compounds because the very ’force of life’ made them different.

This idea of a mystical ’vital force’ in organic compounds was weakened when scientists began to manufacture organic compounds in the laboratory from non-living materials. One of the first to do this was Friedrich Wohler in 1828, who successfully prepared urea, an organic compound in the urine of animals which, until that point, had only been found in animals. A few years later a student of Wohler’s, Hermann Kolbe, made the organic compound acetic acid from inorganic compounds. By this stage it was acknowledged that organic compounds are governed by exactly the same laws that apply to inorganic compounds. The properties of organic compounds are not due to a ’vital force’ but to the unique properties of the carbon atom itself.

Organic compounds are very important in daily life. They make up a big part of our own bodies, they are in the food we eat and in the clothes we wear. Organic compounds are also used to make products such as medicines, plastics, washing powders, dyes, along with a list of other items.

Sources of carbon

The main source of the carbon in organic compounds is carbon dioxide in the air. Plants use sunlight to convert carbon dioxide into organic compounds through the process of photosynthesis. Plants are therefore able to make their own organic compounds through photosynthesis, while animals feed on plants or plant products so that they gain the organic compounds that they need to survive.

Another important source of carbon is fossil fuels such as coal, petroleum and natural gas. This is because fossil fuels are themselves formed from the decaying remains of dead organisms

Properties of carbon

Carbon has a number of unique properties which influence how it behaves and how it bonds with other atoms:

  • Carbon has four valence electrons which means that each carbon atom can form bonds with four other atoms. Because of this, long chain structures can form. These chains can either be unbranched. Because of the number of bonds that carbon can form with other atoms, organic compounds can be very complex.
  • Because of its position on the Periodic Table, most of the bonds that carbon forms with other atoms are covalent. Think for example of a C-C bond. The difference in electronegativity between the two atoms is zero, so this is a pure covalent bond. In the case of a C-H bond, the difference in electronegativity between carbon (2.5) and hydrogen (2.1) is so small that C-H bonds are almost purely covalent. The result of this is that most organic compounds are non-polar. This affects some of the properties of organic compounds.

Representing organic compounds

There are a number of ways to represent organic compounds. It is useful to know all of these so that you can recognize a molecule however it is shown. There are three main ways of representing a compound. We will use the example of a molecule called 2-methylpropane to help explain the difference between each.

Molecular formula

The molecular formula of a compound shows how many atoms of each type are in a molecule. The number of each atom is written as a subscript after the atomic symbol. The molecular formula of 2-methylpropane is:

C4H10

 

Structural formula

The structural formula of an organic compound shows every bond between every atom in the molecule. Each bond is represented by a line. The structural formula of 2-methylpropane is shown below.

 

Condensed structural formula

When a compound is represented using its condensed structural formula, each carbon atom and the hydrogen atoms that are bonded directly to it are listed as a molecular formula, followed by a similar molecular formula for the neighbouring carbon atom.

Branched groups are shown in brackets after the carbon atom to which they are bonded. The condensed structural formula below shows that in 2-methylpropane, there is a branched chain attached to the second carbon atom of the main chain.

CH3CH(CH3)CH3

 

 

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